CNN-Peaks: ChIP-Seq peak detection pipeline using convolutional neural networks that imitate human visual inspection | Scientific Reports
BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks | Epigenetics & Chromatin | Full Text
NGSC - FAQS - ChIP-Seq
ChIP-Seq| Strand NGS
Analysis of ChIP-seq data - Galaxy Community Hub
Sequencing depth and coverage: key considerations in genomic analyses | Nature Reviews Genetics
Vezf1 protein binding sites genome-wide are associated with pausing of elongating RNA polymerase II | PNAS
chip-seq data for histone, tag count
Sequence coverage dominates the raw ChIP-Seq profiles for UBF and RPI.... | Download Scientific Diagram
AutoRELACS: automated generation and analysis of ultra-parallel ChIP-seq | Scientific Reports
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs | BMC Genomics | Full Text
ChIP-Seq Analysis Simplified. ChIP-Seq Analysis in Hours | Basepair
ChIP-seq peak types from various experiments.(a–c) Data shown are from... | Download Scientific Diagram
Example genome browser screen-shot. ChIP-seq read coverage of H3K27me3... | Download Scientific Diagram
Depicted are the z-standardized ChIP-seq coverage profiles for 2... | Download Scientific Diagram
Basics of ChIP-seq data analysis
RNA-Seq - Wikipedia
Example usage — deepTools 3.5.0 documentation
Basics of ChIP-seq data analysis
Going Beyond ChIP-seq - Dovetail Genomics
Methods for ChIP-seq analysis: A practical workflow and advanced applications - ScienceDirect
